Data

metabolicMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.

The following data are loaded in metabolicMine BETA:


Type Source Organisms Version
Genome sequence and annotation Ensembl Human, Mouse Ensembl 70
SNPs Ensembl (including dbSNP, HGMD, COSMIC, ESP) Human Ensembl 70 (dbSNP 137)
GWAS HuGE navigator (including GWAS catalog) Human May 2013
Gene names and symbol HGNC, NCBI, MGI, RGD Human, Mouse, Rat April 2013
Protein sequence and annotation UniProt Human, Mouse April 2013
Protein domains InterPro Human, Mouse April 2013
Gene Ontology UniProt, MGI, GO Consortium Human, Mouse April 2013
Pathways Reactome Human, Mouse May 2013
Pathways KEGG Human, Mouse May 2011
Protein localisation Human Protein Atlas (HPA) Human (v.10.0) Feb 2013
Gene expression ArrayExpress Atlas (experiment E-MTAB-62) Human June 2011
Gene expression ArrayExpress Atlas (experiment E-MEXP-2559) Human Jan 2010
Interactions IntAct Human, Mouse May 2013
Interactions BioGRID Human, Mouse 3.2.99 (May 2013)
Publications NCBI PubMed (gene to PubMed id mappings) Human, Mouse Jun 2013
Disease OMIM Human Feb 2013
Orthologues Ensembl Compara Human, Mouse, Rat Ensembl 70
Alleles MGI Mouse Apr 2013